http://www.cellillustrator.com/ 2010-02-09T03:45:31+09:00 http://www.cellillustrator.com/ http://www.cellillustrator.com/lib/images/favicon.ico text/html 2009-12-02T20:16:59+09:00 http://www.cellillustrator.com/case_studies?rev=1259752619&do=diff Cell Illustrator has been successfully utilized to model biological pathways like Circadian Rhythms of Drosophila, Glycolytic pathway and Fas ligand induced Apoptosis. Gene regulatory networks * Switching mechanism of lambda phage * Circadian rhythms in Drosophila * Circadian rhythms in Mus musculus text/html 2007-03-30T14:45:19+09:00 http://www.cellillustrator.com/ci_project?rev=1175233519&do=diff The University of Tokyo is developing Cell Illustrator to support own research efforts as well as research collaborations with other pharmaceutical companies. Cell Illustrator is based on Genomic Object Net (GON), a previous project at Miyano lab, Human Genome Center, University of Tokyo. GON was also extensively used in Matsuno lab in Yamaguchi University and succeeded to model various biological pathways. text/html 2009-06-19T18:06:27+09:00 http://www.cellillustrator.com/contact?rev=1245402387&do=diff Please submit query from the form below or contact to the resellers. Form Resellers FQS Poland Sp. z o. o. ul. Parkowa 11 30-538 Krakow Poland Tel.: (+48 12) 429 43 45 Fax: (+48 12) 429 61 24 C Innovation Tokyo Japan text/html 2007-08-23T18:52:13+09:00 http://www.cellillustrator.com/dds?rev=1187862733&do=diff Documentation A step-by-step tutorial and an extensive manual are available in PDF format. * [Download] the CI Tutorial (PDF, 1.4 MB) * [Download] the CI User Guide (PDF, 2.3 MB) * [Download] the CI Reference Manual (PDF, 1.1 MB) * [Download] the CI Release Notes (PDF, 170 KB) * [Download] the CI Brochure (PDF, 300 KB) * [Download] the CI Gene Net Mode User Guide (PDF, 320KB KB) text/html 2007-03-30T19:45:03+09:00 http://www.cellillustrator.com/examples?rev=1175251503&do=diff “... a highly valuable tool in helping to advance the research efforts undertaken here for the Visible CellTR project. It is a goal of the Visible CellTM project to map the output of Cell Illustrator onto a 3D physical model of the cell so that network models can be integrated and visualized ...” said Professor Mark Ragan, the University of Queensland text/html 2009-12-08T18:59:23+09:00 http://www.cellillustrator.com/functionality?rev=1260266363&do=diff With Cell Illustrator you can: * Draw the biological pathway model * Define its simulation properties * Run the simulation and display its results All this can be done in one window. Drawing Biological Diagrams Cell Illustrator provides biochemists with comprehensive visual representations of biochemical processes which form large and complex networks. The software enables the user to create his pathway from the scratch or to import single reactions or whole pathways from databases, … text/html 2010-01-14T00:47:45+09:00 http://www.cellillustrator.com/home?rev=1263397665&do=diff Cell Illustrator 4.0 is a software tool that enables biologists to draw, model, elucidate and simulate complex biological processes and systems. It has outstanding drawing capabilities, moreover it allows researchers to model metabolic pathways, signal transduction cascades, gene regulatory pathways as well as dynamic interactions of various biological entities such as genomic DNA, mRNA and proteins. text/html 2010-01-14T23:12:24+09:00 http://www.cellillustrator.com/key_features?rev=1263478344&do=diff The online publication Cell Illustrator 4.0: A computational platform for systems biology gives a detailed description of Cell Illustrator features. Creating Models Importing Models Simulation text/html 2009-12-04T20:03:33+09:00 http://www.cellillustrator.com/lineup?rev=1259924613&do=diff Standalone * Cell Illustrator 4.0 Player (Free License) Offers those aspiring to be medical professionals a package containing basic features, available without charge, to create pathways. * Cell Illustrator 4.0 Access (Draw) For general users, not needed to simulate pathways, while preserving the most functions in Cell Illustrator Professional for viewing, analyzing and drawing pathways. text/html 2010-02-02T20:27:36+09:00 http://www.cellillustrator.com/menu?rev=1265110056&do=diff * Cell Illustrator 4.0 * Functionality * Key Features * Simulation Engines * Release Notes * Case Studies * Lineup * CI Project * Related Projects * Scientific Publications * System Requirements * Documentation/Support * Forum * Trial License - CI Pro * Previous Version text/html 2010-01-14T22:39:25+09:00 http://www.cellillustrator.com/new_version?rev=1263476365&do=diff * CI Online Server Cell Illustrator version 4.0 can be run directly from the website, without the need to install software on local computer. The new CI Online server offers several web services such as Project Manager and CSMLDB Search that can be accessed from the CI workspace. CI Online is available at: <https://cio.bioillustrator.com/> or <https://cionline.hgc.jp> text/html 2007-03-08T12:36:21+09:00 http://www.cellillustrator.com/overview?rev=1173324981&do=diff Cell Illustrator provides biochemists with comprehensive visual representations of biochemical processes which form large and complex networks. The software gives new insight to understanding these networks and relationships between chemical components in structurally complex dynamic interactions and processes. Cell Illustrator aids researchers in modeling metabolic pathways, signal transduction cascades, gene regulatory pathways as well as dynamic interactions of various biological entities s… text/html 2009-11-26T01:03:20+09:00 http://www.cellillustrator.com/previous?rev=1259165000&do=diff Cell Illustrator 3.0 is a software tool that enables biologists to draw, model, elucidate and simulate complex biological processes and systems. It has outstanding drawing capabilities, moreover it allows researchers to model metabolic pathways, signal transduction cascades, gene regulatory pathways as well as dynamic interactions of various biological entities such as genomic DNA, mRNA and proteins. text/html 2009-12-02T00:58:53+09:00 http://www.cellillustrator.com/publications?rev=1259683133&do=diff Genomic Object Net was the research version of Cell Illustrator in the University of Tokyo. When Cell Illustrator is cited, please cite the literature, Genomic Object Net:I. A platform for modeling and simulating biopathways, Applied Bioinformatics 2:181-184(2004). text/html 2009-12-04T23:53:05+09:00 http://www.cellillustrator.com/register?rev=1259938385&do=diff The latest version of Cell Illustrator can be evaluated from the website on * Cell Illustrator Online 4.0 * Cell Illustrator Online 4.0 (mirror) Please click the “Register” button on that website then you can evaluate all functions of Cell Illustrator for two weeks. text/html 2010-02-02T20:04:15+09:00 http://www.cellillustrator.com/simulation_engines?rev=1265108655&do=diff Cell Illustrator (CI) allows researchers to simulate complex biological processes. The modeling and simulation engine of Cell Illustrator is based on an extension of the Petri-net methodology. Cell Illustrator offers two modes of simulation described below. text/html 2007-03-30T14:22:22+09:00 http://www.cellillustrator.com/system_requirements?rev=1175232142&do=diff Cell Illustrator 4.0 * Supported Operating System * Windows * Linux * Mac OS X 10.4.8 or higher(Tiger) * Unix * any other OS with Java 1.5 * Hardware * CPU: > 2 GHz RAM: 2GB, Disk space: 1GB * Others * Java Runtime Environment (JRE) 1.5.0 or higher.